Publications.

Contrastive learning of T cell receptor representations
2024
T cell receptor contrastive learning transformer
Yuta Nagano, Andrew G.T. Pyo, Martina Milighetti, James Henderson, John Shawe-Taylor, Benny Chain, Andreas Tiffeau-Mayer
Cell Systems
Data-driven Discovery of Biophysical T Cell Receptor Co-specificity Rules
2025
T cell receptor biophysics
Andrew G.T. Pyo, Yuta Nagano, Martina Milighetti, James Henderson, Curtis G. Callan Jr., Benny Chain, Ned S. Wingreen, Andreas Tiffeau-Mayer
PRX Life
Limits on Inferring T-cell Specificity from Partial Information
2024
T cell receptor information theory
James Henderson, Yuta Nagano, Martina Milighetti, Andreas Tiffeau-Mayer
PNAS
Systematic analysis of CDR contacts and sequence constraints between T cell receptor αβ chains
2024
T cell receptor structural biology information theory
Martina Milighetti, Yuta Nagano, James Henderson, Uri Hershberg, Andreas Tiffeau-Mayer, Anne-Florence Bitbol, Benny Chain
Bioinformatics
tidytcells: standardizer for TR/MH nomenclature
2023
immunoinformatics nomenclature software
Yuta Nagano, Benjamin Chain
Frontiers in Immunology
Overcoming data bottlenecks in T cell receptor specificity prediction with effective machine learning
2024
T cell receptor machine learning thesis
Yuta Nagano
UCL